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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
Assay category
13
DNA binding
Target of assay
353
transcription factor
82
recombinant protein
75
control
64
RNA binding protein
30
chromatin remodeller
26
histone
26
histone modification
13
broad histone mark
13
narrow histone mark
2
other context
2
other post-translational modification
Date released
8
November, 2017
4
October, 2019
1
August, 2021
Available data
12
bam
12
bigWig
11
bed narrowPeak
10
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
8
fastq
6
tagAlign
Organism
13
Homo sapiens
Biosample type
283
tissue
114
primary cell
56
in vitro differentiated cells
13
cell line
1
stem cell
Organ
9
liver
4
pancreas
Project
13
AMP
Genome assembly (visualization)
12
hg19
10
GRCh38
Lab
12
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
inconsistent ontology term
Audit category:
6
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
13 results
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ChIP-seq
cell line
HepG2
9
Panc1
4
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