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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
ChIP-seq
47
total RNA-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
Assay category
191
DNA binding
47
Transcription
DNA accessibility
Target of assay
110
histone
110
histone modification
56
broad histone mark
53
narrow histone mark
46
transcription factor
35
control
11
RNA binding protein
3
chromatin remodeller
Date released
67
August, 2017
59
May, 2021
39
December, 2017
39
February, 2018
30
August, 2021
4
February, 2021
4
January, 2018
2
February, 2023
1
August, 2018
1
March, 2020
Available data
179
bam
154
bigWig
136
fastq
105
bed narrowPeak
41
tsv
37
tagAlign
21
bed bed3+
14
bigBed narrowPeak
1
bedpe bed3+
Organism
246
Homo sapiens
Biosample type
2178
tissue
761
primary cell
558
cell line
246
in vitro differentiated cells
9
stem cell
Organ
77
connective tissue
23
embryo
19
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
246
AMP
Genome assembly (visualization)
156
hg19
155
GRCh38
4
hg18
Lab
202
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
246 results
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ChIP-seq
total RNA-seq
GRO-seq
Capture-C
pCHi-C
in vitro differentiated cells
adipocyte
67
5
1
embryonic stem cell
40
7
1
neural progenitor cell
21
7
pancreatic endoderm
18
4
1
hepatocyte
15
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