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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
ChIP-seq
Assay category
191
DNA binding
47
Transcription
33
DNA accessibility
Target of assay
110
histone
110
histone modification
56
broad histone mark
53
narrow histone mark
46
transcription factor
35
control
11
RNA binding protein
3
chromatin remodeller
Date released
67
August, 2017
40
May, 2021
39
December, 2017
24
February, 2018
21
August, 2021
Available data
139
bam
116
fastq
110
bigWig
105
bed narrowPeak
37
tagAlign
19
bed bed3+
14
bigBed narrowPeak
Organism
191
Homo sapiens
Biosample type
865
tissue
459
cell line
254
primary cell
191
in vitro differentiated cells
3
stem cell
Organ
67
connective tissue
18
embryo
18
epithelium
15
liver
3
pancreas
Project
191
AMP
Genome assembly (visualization)
115
GRCh38
114
hg19
Lab
154
AMP-T2D consortium
37
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
191 results
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ChIP-seq
in vitro differentiated cells
adipocyte
67
embryonic stem cell
40
neural progenitor cell
21
pancreatic endoderm
18
hepatocyte
15
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