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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
ChIP-seq
40
total RNA-seq
10
ATAC-seq
1
DNase-seq
Assay category
115
DNA binding
40
Transcription
11
DNA accessibility
Target of assay
76
histone
76
histone modification
38
narrow histone mark
37
broad histone mark
34
transcription factor
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
49
August, 2017
36
December, 2017
31
February, 2018
30
August, 2021
16
May, 2021
4
February, 2021
Available data
166
bam
151
bigWig
116
bed narrowPeak
116
fastq
40
tsv
19
bed bed3+
15
bigBed narrowPeak
15
tagAlign
1
bed broadPeak
1
bigBed broadPeak
Organism
166
Homo sapiens
Biosample type
1815
tissue
500
primary cell
407
cell line
166
in vitro differentiated cells
3
stem cell
Organ
54
connective tissue
17
embryo
17
epithelium
14
liver
2
pancreas
1
heart
Project
166
AMP
Genome assembly (visualization)
189
hg19
166
GRCh38
4
hg18
Lab
166
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
16
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
166 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
48
4
1
neural progenitor cell
13
7
10
pancreatic endoderm
13
4
hepatocyte
14
definitive endodermal cell
7
2
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