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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
ChIP-seq
47
total RNA-seq
32
ATAC-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
1
DNase-seq
Assay category
175
DNA binding
47
Transcription
33
DNA accessibility
Target of assay
104
histone
104
histone modification
52
narrow histone mark
51
broad histone mark
36
transcription factor
35
control
11
RNA binding protein
1
chromatin remodeller
Date released
64
May, 2021
62
August, 2017
42
August, 2021
37
February, 2018
31
December, 2017
11
February, 2023
8
February, 2021
4
January, 2018
2
October, 2019
1
August, 2018
1
March, 2020
Available data
174
bam
150
bigWig
121
fastq
103
bed narrowPeak
41
tsv
37
tagAlign
17
bigBed narrowPeak
15
bed bed3+
6
bed bedgraph
5
bed bed3
2
txt
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
263
Homo sapiens
Biosample type
2640
tissue
1029
primary cell
544
cell line
263
in vitro differentiated cells
7
stem cell
Organ
87
connective tissue
21
embryo
19
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
263
AMP
Genome assembly (visualization)
173
hg19
150
GRCh38
4
hg18
Lab
210
AMP-T2D consortium
47
Kyle Gaulton, UCSD
6
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
263 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
adipocyte
61
5
8
1
1
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
16
4
1
hepatocyte
15
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