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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
32
ATAC-seq
32
total RNA-seq
2
Capture-C
1
pCHi-C
Assay category
75
DNA binding
32
DNA accessibility
32
Transcription
Target of assay
47
histone
47
histone modification
25
broad histone mark
22
narrow histone mark
15
control
13
transcription factor
5
RNA binding protein
Date released
64
May, 2021
42
August, 2021
14
August, 2017
11
February, 2023
8
February, 2021
2
October, 2019
1
March, 2020
Available data
190
bam
166
bigWig
fastq
119
bed narrowPeak
41
tsv
37
tagAlign
23
bed bed3+
17
bigBed narrowPeak
6
bed bedgraph
5
bed bed3
2
txt
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
142
Homo sapiens
Biosample type
2269
tissue
632
primary cell
143
cell line
142
in vitro differentiated cells
5
stem cell
Organ
38
connective tissue
4
epithelium
3
pancreas
1
heart
Project
142
AMP
Genome assembly (visualization)
73
hg19
50
GRCh38
Lab
89
AMP-T2D consortium
47
Kyle Gaulton, UCSD
6
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
2
audit script error
audit.ERROR.category!
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
142 results
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ChIP-seq
ATAC-seq
total RNA-seq
Capture-C
pCHi-C
in vitro differentiated cells
embryonic stem cell
37
6
5
1
neural progenitor cell
21
10
7
adipocyte
14
8
5
1
induced pluripotent stem cell
9
chondrocyte
5
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