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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
ChIP-seq
47
total RNA-seq
32
ATAC-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
1
DNase-seq
Assay category
188
DNA binding
47
Transcription
33
DNA accessibility
Target of assay
109
histone
109
histone modification
56
broad histone mark
52
narrow histone mark
45
transcription factor
34
control
11
RNA binding protein
3
chromatin remodeller
Date released
68
August, 2017
61
May, 2021
42
August, 2021
39
December, 2017
39
February, 2018
11
February, 2023
8
February, 2021
4
January, 2018
2
October, 2019
1
August, 2018
1
March, 2020
Available data
187
bam
164
bigWig
137
fastq
117
bed narrowPeak
41
tsv
34
tagAlign
23
bed bed3+
17
bigBed narrowPeak
6
bed bedgraph
5
bed bed3
2
txt
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
276
Homo sapiens
Biosample type
2141
tissue
693
primary cell
554
cell line
276
in vitro differentiated cells
9
stem cell
Organ
93
connective tissue
23
embryo
19
epithelium
15
liver
pancreas
1
adipose tissue
1
heart
Project
276
AMP
Genome assembly (visualization)
187
hg19
164
GRCh38
4
hg18
Lab
223
AMP-T2D consortium
47
Kyle Gaulton, UCSD
6
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
organ_slims!
pancreas
BIOSAMPLE
ASSAY
276 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
hepatocyte
15
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