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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1021
total RNA-seq
903
ChIP-seq
180
single cell RNA-seq
27
WGBS
16
small RNA-seq
11
RRBS
9
Hi-C
5
pCHi-C
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1217
Transcription
903
DNA binding
DNA accessibility
38
DNA methylation
9
3D chromatin structure
Target of assay
624
histone modification
623
histone
320
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
453
February, 2021
279
August, 2017
220
October, 2019
193
May, 2020
159
August, 2021
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
69
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
March, 2020
27
May, 2022
24
February, 2020
20
November, 2019
16
November, 2018
15
October, 2017
14
February, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
Available data
1651
bam
1537
bigWig
1047
tsv
591
bed narrowPeak
377
bigBed narrowPeak
336
fastq
238
tagAlign
72
txt
35
bed broadPeak
28
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
4
hic
3
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
2174
Homo sapiens
Biosample type
2182
tissue
760
primary cell
554
cell line
245
in vitro differentiated cells
6
stem cell
Organ
538
connective tissue
479
adipose tissue
416
pancreas
333
liver
240
heart
228
brain
149
kidney
87
blood vessel
87
vasculature
78
limb
62
bone element
43
musculature of body
40
nerve
32
artery
25
eye
22
spleen
9
lung
4
gonad
4
ovary
4
skeleton
3
epithelium
1
lymph node
1
pericardium
1
pituitary gland
1
spinal cord
1
thymus
Project
2120
AMP
47
KPMP
9
LungMap
6
T1D
Genome assembly (visualization)
1513
GRCh38
1449
hg19
Lab
1985
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
assay_slims!
DNA accessibility
month_released!
March, 2020
BIOSAMPLE
ASSAY
2182 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
WGBS
small RNA-seq
RRBS
Hi-C
pCHi-C
MeRIP-seq
RNA microarray
snDrop-seq
tissue
adipose tissue
382
2
3
islet of Langerhans
290
69
6
1
3
4
4
liver
166
145
1
3
1
1
kidney
49
27
64
1
1
heart left ventricle
2
35
18
4
1
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