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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
865
ChIP-seq
259
ATAC-seq
177
DNase-seq
174
single cell RNA-seq
28
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
865
DNA binding
468
DNA accessibility
190
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
591
histone modification
590
histone
307
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
218
October, 2019
195
August, 2017
179
August, 2021
162
June, 2019
115
May, 2019
82
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
47
September, 2023
46
July, 2019
40
May, 2022
29
March, 2020
26
November, 2018
23
October, 2017
20
November, 2019
19
April, 2020
17
February, 2021
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
996
bam
940
bed narrowPeak
828
bigWig
560
bigBed narrowPeak
274
fastq
238
tagAlign
212
bed broadPeak
204
bed bed3+
175
bigBed broadPeak
143
tsv
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
14
txt
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1601
Homo sapiens
Biosample type
1610
tissue
791
primary cell
493
cell line
232
in vitro differentiated cells
9
stem cell
Organ
258
heart
249
kidney
246
brain
216
pancreas
191
liver
126
blood vessel
126
vasculature
114
limb
91
connective tissue
90
adipose tissue
76
musculature of body
71
artery
38
nerve
37
eye
25
spleen
20
lung
18
ureter
13
epithelium
12
bone element
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
Project
1520
AMP
47
KPMP
24
T1D
19
LungMap
Genome assembly (visualization)
913
GRCh38
849
hg19
Lab
1380
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
40
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
1610 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
kidney
27
75
13
64
6
1
1
1
liver
145
20
2
1
3
1
1
1
1
islet of Langerhans
71
68
1
7
4
3
1
1
4
heart left ventricle
35
2
3
18
4
1
1
1
body of pancreas
35
4
4
2
2
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