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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
377
ChIP-seq
176
DNase-seq
4
FAIRE-seq
3
ATAC-seq
Assay category
377
DNA binding
183
DNA accessibility
Target of assay
312
histone
312
histone modification
204
broad histone mark
108
narrow histone mark
65
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
162
June, 2019
93
May, 2019
64
April, 2019
57
November, 2017
47
October, 2019
45
October, 2018
36
December, 2017
22
August, 2017
17
November, 2018
6
January, 2019
6
October, 2017
3
December, 2018
2
July, 2019
Available data
1903
bam
1729
bigWig
1073
tsv
940
bed narrowPeak
560
bigBed narrowPeak
377
fastq
238
tagAlign
212
bed broadPeak
204
bed bed3+
175
bigBed broadPeak
73
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
554
Homo sapiens
Biosample type
560
tissue
355
cell line
86
primary cell
17
in vitro differentiated cells
Organ
116
brain
88
heart
87
kidney
83
limb
62
blood vessel
62
pancreas
62
vasculature
49
liver
37
musculature of body
26
nerve
25
artery
18
ureter
13
spleen
10
adipose tissue
10
connective tissue
3
eye
Project
560
AMP
Genome assembly (visualization)
554
GRCh38
492
hg19
Lab
560
AMP-T2D consortium
Audit category:
27
inconsistent control
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
560 results
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ChIP-seq
DNase-seq
FAIRE-seq
ATAC-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
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