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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1021
total RNA-seq
782
ChIP-seq
220
ATAC-seq
150
DNase-seq
81
single cell RNA-seq
28
snATAC-seq
20
pCHi-C
19
WGBS
15
small RNA-seq
13
Hi-C
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1117
Transcription
782
DNA binding
402
DNA accessibility
29
DNA methylation
13
3D chromatin structure
Target of assay
531
histone modification
530
histone
284
narrow histone mark
246
broad histone mark
171
control
82
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
461
February, 2021
284
August, 2017
232
October, 2019
193
May, 2020
137
August, 2021
135
June, 2019
120
July, 2018
94
May, 2019
82
November, 2017
74
October, 2018
66
May, 2022
59
February, 2023
57
July, 2019
48
December, 2017
47
September, 2023
39
November, 2019
38
May, 2021
31
March, 2020
26
November, 2018
23
April, 2019
23
October, 2017
21
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1771
bam
1612
bigWig
962
tsv
807
bed narrowPeak
472
bigBed narrowPeak
377
fastq
238
tagAlign
185
bed broadPeak
177
bed bed3+
148
bigBed broadPeak
73
txt
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2364
Homo sapiens
Biosample type
2373
tissue
1027
primary cell
504
cell line
278
in vitro differentiated cells
9
stem cell
Organ
546
connective tissue
505
pancreas
487
adipose tissue
361
liver
299
kidney
heart
262
brain
133
blood vessel
133
vasculature
121
limb
81
musculature of body
74
bone element
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
2276
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1664
GRCh38
1638
hg19
Lab
2061
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
organ_slims!
heart
BIOSAMPLE
ASSAY
2373 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
298
71
68
1
7
4
3
1
1
4
adipose tissue
382
2
3
1
3
liver
167
145
20
2
1
1
3
1
1
1
kidney
49
27
75
13
64
6
1
1
1
bone tissue
58
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