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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
69
ATAC-seq
59
total RNA-seq
19
ChIP-seq
6
snATAC-seq
4
Hi-C
4
STARR-seq
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
75
DNA accessibility
19
DNA binding
4
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
267
August, 2021
194
February, 2023
176
May, 2022
129
August, 2017
105
May, 2021
62
October, 2019
59
February, 2021
59
September, 2020
58
May, 2020
47
September, 2023
40
May, 2024
36
March, 2020
24
February, 2020
24
July, 2019
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
8
January, 2018
8
October, 2017
7
August, 2020
5
March, 2023
4
July, 2018
4
March, 2019
4
November, 2020
4
October, 2022
3
December, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
November, 2019
1
September, 2018
Available data
123
tsv
106
bed narrowPeak
64
xls
57
txt
bam
47
bigWig
24
tagAlign
5
bed bed3+
3
hic
2
bedpe bed3+
1
bed broadPeak
1
bedpe
1
fastq
1
vcf
Organism
270
Homo sapiens
Biosample type
233
tissue
33
cell line
5
in vitro differentiated cells
Organ
130
kidney
92
heart
31
liver
6
blood vessel
6
pancreas
6
vasculature
5
connective tissue
2
artery
1
adipose tissue
Project
271
AMP
Genome assembly (visualization)
66
GRCh38
23
hg19
Lab
128
Katalin Susztak, Upenn
100
AMP-T2D consortium
37
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
271 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
Hi-C
STARR-seq
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
18
1
2
1
HEK293T
2
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
neural progenitor cell
1
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