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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1670
ChIP-seq
925
total RNA-seq
461
ATAC-seq
356
single cell RNA-seq
200
DNase-seq
84
snATAC-seq
69
WGBS
44
pCHi-C
28
Hi-C
19
RRBS
15
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
2
RNA microarray
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
356
Transcription
Target of assay
3
control
Date released
106
August, 2021
47
April, 2018
47
September, 2023
40
July, 2018
40
September, 2020
34
May, 2022
18
February, 2021
9
April, 2020
3
August, 2018
3
July, 2019
3
May, 2023
2
June, 2018
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
198
tsv
124
fastq
95
bam
95
bigWig
52
zippedFastqFolder
13
txt
8
csv
Organism
356
Homo sapiens
Biosample type
180
tissue
176
primary cell
Organ
93
heart
75
pancreas
69
epithelium
64
kidney
9
lung
6
blood vessel
6
vasculature
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
215
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
95
GRCh38
95
hg19
Lab
204
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
inconsistent ontology term
7
audit script error
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bed bed3
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
356 results
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single cell RNA-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 14 more…
primary cell
Langerhans cell
85
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic acinar cell
11
pancreatic delta cell
11
+ See 10 more…
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