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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
Assay category
24
DNA binding
Target of assay
14
histone
14
histone modification
10
transcription factor
7
broad histone mark
7
narrow histone mark
2
chromatin remodeller
Date released
10
August, 2017
10
December, 2017
2
February, 2018
2
November, 2017
Available data
55
bam
55
bigWig
55
fastq
53
bed narrowPeak
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
24
Homo sapiens
Biosample type
16
in vitro differentiated cells
4
primary cell
2
cell line
2
stem cell
Organ
6
connective tissue
4
epithelium
4
pancreas
2
embryo
2
liver
Project
24
AMP
Genome assembly (visualization)
24
hg19
22
GRCh38
Lab
24
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
24
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bed bed3
bigBed narrowPeak
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
cell line
HepG2
2
stem cell
hESC
2
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