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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1260
ChIP-seq
1208
total RNA-seq
456
ATAC-seq
359
single cell RNA-seq
202
DNase-seq
84
snATAC-seq
70
WGBS
45
pCHi-C
25
Hi-C
17
RRBS
15
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
2
STARR-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
25
3D chromatin structure
Date released
7
July, 2019
7
March, 2020
3
October, 2019
3
October, 2022
2
August, 2021
1
March, 2019
1
March, 2023
1
November, 2019
Available data
16
hic
13
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
3
cool
1
bedpe
Organism
25
Homo sapiens
Biosample type
15
tissue
9
primary cell
1
cell line
Organ
8
pancreas
7
epithelium
6
musculature of body
5
blood vessel
5
vasculature
4
limb
liver
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
Project
21
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
19
hg19
2
GRCh38
Lab
18
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bed bed3
organ_slims!
liver
BIOSAMPLE
ASSAY
25 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
+ See 4 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
+ See 3 more…
cell line
Panc1
1
See all biosamples
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