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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ChIP-seq
Assay category
93
DNA binding
Target of assay
575
histone modification
574
histone
340
narrow histone mark
328
control
233
broad histone mark
93
transcription factor
15
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
1
recombinant protein
Date released
45
August, 2017
13
May, 2021
11
August, 2021
9
December, 2017
8
November, 2017
5
February, 2021
1
April, 2019
1
November, 2018
Available data
477
bigWig
471
bam
454
fastq
450
bed narrowPeak
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
19
bed bed3+
6
tagAlign
3
tar
Organism
93
Homo sapiens
Biosample type
44
in vitro differentiated cells
25
cell line
24
tissue
Organ
34
connective tissue
24
liver
12
adipose tissue
8
pancreas
4
artery
4
blood vessel
4
heart
4
vasculature
3
embryo
1
epithelium
1
kidney
Project
93
AMP
Genome assembly (visualization)
75
hg19
60
GRCh38
Lab
70
AMP-T2D consortium
12
Kyle Gaulton, UCSD
11
Bing Ren, UCSD
Audit category:
inconsistent ontology term
Audit category:
24
missing controlled_by
Audit category:
10
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
93 results
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ChIP-seq
in vitro differentiated cells
adipocyte
22
embryonic stem cell
12
pancreatic endoderm
3
Posterior foregut
2
definitive endodermal cell
2
+ See 2 more…
cell line
HepG2
20
smooth muscle cell of the coronary artery
4
iPSC derived cell line
1
tissue
white adipose tissue
12
islet of Langerhans
7
liver
4
kidney
1
See all biosamples
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