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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
47
total RNA-seq
32
ATAC-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
1
DNase-seq
Assay category
154
DNA binding
47
Transcription
33
DNA accessibility
Target of assay
84
histone
84
histone modification
45
transcription factor
42
broad histone mark
41
narrow histone mark
25
control
11
RNA binding protein
3
chromatin remodeller
Date released
61
May, 2021
54
August, 2017
39
December, 2017
39
February, 2018
22
August, 2021
11
February, 2023
8
February, 2021
4
January, 2018
2
October, 2019
1
August, 2018
1
March, 2020
Available data
190
bam
166
bigWig
137
fastq
119
bed narrowPeak
41
tsv
tagAlign
23
bed bed3+
17
bigBed narrowPeak
6
bed bedgraph
5
bed bed3
2
txt
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
242
Homo sapiens
Biosample type
2408
tissue
934
primary cell
550
cell line
242
in vitro differentiated cells
9
stem cell
Organ
79
connective tissue
23
embryo
16
epithelium
15
liver
1
adipose tissue
1
heart
Project
242
AMP
Genome assembly (visualization)
175
hg19
151
GRCh38
4
hg18
Lab
189
AMP-T2D consortium
47
Kyle Gaulton, UCSD
6
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
242 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
adipocyte
53
5
8
1
1
embryonic stem cell
40
7
6
1
pancreatic endoderm
18
4
1
neural progenitor cell
1
7
10
hepatocyte
15
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