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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
254
ChIP-seq
182
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
41
WGBS
28
DNase-seq
16
pCHi-C
10
Hi-C
8
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
267
DNA accessibility
254
DNA binding
184
Transcription
50
DNA methylation
10
3D chromatin structure
Target of assay
220
histone
220
histone modification
114
broad histone mark
106
narrow histone mark
27
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
153
May, 2021
134
May, 2022
98
May, 2020
76
February, 2023
59
August, 2017
59
September, 2020
47
September, 2018
41
February, 2021
30
June, 2019
30
October, 2019
11
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
September, 2017
4
August, 2021
3
October, 2022
2
May, 2019
2
November, 2020
1
March, 2020
1
March, 2023
1
November, 2018
Available data
575
bigWig
564
bam
402
fastq
270
bed narrowPeak
tsv
153
zippedFastqFolder
100
tagAlign
86
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
34
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
781
Homo sapiens
Biosample type
1613
tissue
781
primary cell
490
cell line
238
in vitro differentiated cells
6
stem cell
Organ
281
epithelium
238
pancreas
34
vasculature
29
blood vessel
22
kidney
22
vein
18
brain
11
connective tissue
8
blood
8
bodily fluid
8
liver
5
eye
4
musculature of body
3
heart
1
bone element
1
bone marrow
Project
355
AMP
318
HPAP
107
T1D
1
ITG
Genome assembly (visualization)
345
hg19
259
GRCh38
Lab
320
AMP-T2D consortium
318
Klaus Kaestner, Upenn
142
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
files.file_type!
tsv
BIOSAMPLE
ASSAY
781 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
13
35
42
25
1
monocyte
85
15
1
1
1
pancreatic beta cell
13
23
11
16
1
exocrine cell
39
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