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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
1
whole genome sequencing assay
Assay category
60
DNA accessibility
52
Transcription
41
DNA methylation
1
DNA sequencing
Date released
134
May, 2022
19
September, 2020
1
August, 2021
Available data
3180
bam
2977
bigWig
1754
bed narrowPeak
1450
tsv
1347
fastq
1018
bigBed narrowPeak
395
tagAlign
318
bed broadPeak
281
bigBed broadPeak
267
bed bed3+
153
zippedFastqFolder
76
txt
xls
34
bed bedMethyl
34
bigBed bedMethyl
18
hic
16
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
154
Homo sapiens
Biosample type
153
primary cell
1
cell line
Organ
80
epithelium
80
pancreas
1
liver
Project
153
HPAP
1
AMP
Lab
153
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
audit.ERROR.category!
inconsistent ontology term
files.file_type!
xls
BIOSAMPLE
ASSAY
154 results
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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
whole genome sequencing assay
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
cell line
HepG2
1
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