Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1723
ChIP-seq
1403
total RNA-seq
450
ATAC-seq
302
single cell RNA-seq
208
DNase-seq
63
snATAC-seq
48
pCHi-C
34
WGBS
29
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
302
Transcription
Target of assay
3
control
Date released
106
August, 2021
47
September, 2023
43
April, 2018
42
July, 2018
21
September, 2020
18
February, 2021
9
April, 2020
3
August, 2018
3
July, 2019
3
May, 2023
2
June, 2018
1
December, 2019
1
February, 2023
1
May, 2022
1
November, 2018
1
September, 2018
Available data
196
tsv
121
fastq
93
bam
93
bigWig
zippedFastqFolder
13
txt
8
csv
Organism
302
Homo sapiens
Biosample type
174
tissue
128
primary cell
Organ
93
heart
69
epithelium
69
pancreas
64
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
213
AMP
47
KPMP
33
HPAP
9
LungMap
Genome assembly (visualization)
93
GRCh38
93
hg19
Lab
202
AMP-T2D consortium
47
KPMP
33
Klaus Kaestner, Upenn
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
inconsistent ontology term
7
audit script error
audit.ERROR.category!
inconsistent ontology term
files.file_type!
zippedFastqFolder
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
302 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
primary cell
Langerhans cell
33
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic acinar cell
11
pancreatic delta cell
11
+ See 11 more…
See all biosamples
Download