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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
ChIP-seq
32
ATAC-seq
32
total RNA-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
1
DNase-seq
Assay category
167
DNA binding
33
DNA accessibility
32
Transcription
Target of assay
94
histone
94
histone modification
48
broad histone mark
46
transcription factor
45
narrow histone mark
27
control
11
RNA binding protein
3
chromatin remodeller
Date released
68
August, 2017
64
May, 2021
42
August, 2021
39
December, 2017
February, 2018
11
February, 2023
8
February, 2021
4
January, 2018
2
October, 2019
1
August, 2018
1
March, 2020
Available data
151
bam
135
bigWig
103
bed narrowPeak
98
fastq
37
tagAlign
26
tsv
23
bed bed3+
17
bigBed narrowPeak
6
bed bedgraph
5
bed bed3
2
txt
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
240
Homo sapiens
Biosample type
2686
tissue
881
primary cell
570
cell line
240
in vitro differentiated cells
9
stem cell
Organ
93
connective tissue
19
epithelium
15
liver
10
embryo
3
pancreas
1
adipose tissue
1
heart
Project
240
AMP
Genome assembly (visualization)
158
hg19
135
GRCh38
4
hg18
Lab
187
AMP-T2D consortium
47
Kyle Gaulton, UCSD
6
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
14
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
files.file_type!
zippedFastqFolder
month_released!
February, 2018
BIOSAMPLE
ASSAY
240 results
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ChIP-seq
ATAC-seq
total RNA-seq
GRO-seq
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
adipocyte
67
8
5
1
1
embryonic stem cell
37
6
5
1
neural progenitor cell
21
10
7
hepatocyte
15
pancreatic endoderm
9
1
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