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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
5
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
6
DNA binding
5
DNA accessibility
1
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
2
transcription factor
1
broad histone mark
1
control
Date released
3
August, 2017
3
August, 2021
3
November, 2018
2
June, 2019
1
February, 2021
1
July, 2019
Available data
680
bam
622
bigWig
465
fastq
440
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
13
Homo sapiens
Biosample type
6
primary cell
6
tissue
1
cell line
Organ
77
kidney
35
brain
35
limb
33
musculature of body
29
heart
29
pancreas
24
connective tissue
20
epithelium
18
ureter
13
liver
12
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
13
AMP
Genome assembly (visualization)
13
hg19
11
GRCh38
Lab
13
AMP-T2D consortium
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inconsistent ontology term
BIOSAMPLE
ASSAY
13 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
pCHi-C
primary cell
hepatocyte
3
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
tissue
liver
3
2
right lobe of liver
1
cell line
HepG2
1
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