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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
Hi-C
12
ATAC-seq
1
pCHi-C
Assay category
15
3D chromatin structure
12
DNA accessibility
Date released
10
February, 2023
8
March, 2020
3
October, 2022
2
August, 2021
2
February, 2021
1
August, 2018
1
November, 2019
1
October, 2019
Available data
3180
bam
2937
bigWig
1714
bed narrowPeak
1450
tsv
1347
fastq
1018
bigBed narrowPeak
395
tagAlign
318
bed broadPeak
281
bigBed broadPeak
267
bed bed3+
153
zippedFastqFolder
76
txt
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
18
hic
16
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
28
Homo sapiens
Biosample type
15
tissue
6
in vitro differentiated cells
5
primary cell
2
cell line
Organ
7
connective tissue
6
pancreas
4
bone element
4
epithelium
4
skeleton
3
heart
3
liver
2
blood vessel
2
musculature of body
2
vasculature
1
adipose tissue
1
brain
1
vein
Project
25
AMP
3
HPAP
Genome assembly (visualization)
26
hg19
2
GRCh38
Lab
23
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
inconsistent ontology term
3
audit script error
1
inconsistent replicate
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
28 results
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Hi-C
ATAC-seq
pCHi-C
tissue
islet of Langerhans
2
psoas muscle
2
acetabular part of hip bone
1
aorta
1
brain
1
+ See 8 more…
in vitro differentiated cells
chondrocyte
5
white fat cell
1
primary cell
endothelial cell of umbilical vein
1
osteoblast
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
1
1
See all biosamples
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