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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
3
ChIP-seq
1
FAIRE-seq
Assay category
65
DNA accessibility
3
DNA binding
Target of assay
3
transcription factor
1
RNA binding protein
Date released
64
August, 2021
3
November, 2017
1
October, 2019
Available data
3180
bam
2937
bigWig
1714
bed narrowPeak
1450
tsv
1347
fastq
1018
bigBed narrowPeak
395
tagAlign
318
bed broadPeak
281
bigBed broadPeak
267
bed bed3+
153
zippedFastqFolder
76
txt
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
18
hic
16
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
68
Homo sapiens
Biosample type
64
tissue
3
cell line
1
primary cell
Organ
64
kidney
3
liver
1
blood vessel
1
epithelium
1
vasculature
1
vein
Project
68
AMP
Genome assembly (visualization)
64
GRCh38
4
hg19
Lab
64
Katalin Susztak, Upenn
4
AMP-T2D consortium
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
68 results
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ATAC-seq
ChIP-seq
FAIRE-seq
tissue
kidney
64
cell line
HepG2
3
primary cell
endothelial cell of umbilical vein
1
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