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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
84
ChIP-seq
19
ATAC-seq
Assay category
98
Transcription
84
DNA binding
19
DNA accessibility
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
135
May, 2021
41
May, 2020
24
May, 2022
1
March, 2019
Available data
265
bigWig
233
bed narrowPeak
201
bam
195
fastq
153
zippedFastqFolder
108
tsv
84
tagAlign
65
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
cool
2
bed bedgraph
2
bed broadPeak
1
bedpe
1
vcf
Organism
201
Homo sapiens
Biosample type
176
primary cell
25
tissue
Organ
25
pancreas
Project
176
T1D
25
AMP
Genome assembly (visualization)
194
hg19
176
GRCh38
Lab
AMP-T2D consortium
200
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
201 results
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total RNA-seq
ChIP-seq
ATAC-seq
primary cell
monocyte
53
84
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 18 more…
tissue
islet of Langerhans
6
19
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