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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
ChIP-seq
27
DNase-seq
16
total RNA-seq
4
ATAC-seq
4
small RNA-seq
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
207
DNA binding
32
DNA accessibility
20
Transcription
1
DNA methylation
Target of assay
182
histone
182
histone modification
112
narrow histone mark
70
broad histone mark
25
control
Date released
84
October, 2019
82
November, 2017
28
May, 2019
25
June, 2019
16
October, 2017
11
February, 2020
11
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
224
bam
200
bigWig
190
bed narrowPeak
118
tagAlign
116
bigBed narrowPeak
36
bed broadPeak
27
bed bed3+
27
bigBed broadPeak
22
tsv
12
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
262
Homo sapiens
Biosample type
262
tissue
21
primary cell
Organ
546
connective tissue
505
pancreas
487
adipose tissue
361
liver
313
heart
299
kidney
262
brain
133
blood vessel
133
vasculature
121
limb
81
musculature of body
74
bone element
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
262
AMP
Genome assembly (visualization)
201
GRCh38
141
hg19
Lab
262
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
4
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
262 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
FAIRE-seq
RRBS
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
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