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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
single cell RNA-seq
25
ChIP-seq
15
total RNA-seq
10
ATAC-seq
1
RNA microarray
Assay category
113
Transcription
25
DNA binding
10
DNA accessibility
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
8
control
Date released
542
February, 2021
411
August, 2017
406
November, 2017
292
May, 2020
291
October, 2019
192
June, 2019
162
July, 2018
149
August, 2021
117
May, 2019
106
July, 2019
93
February, 2023
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
75
May, 2021
73
September, 2018
49
April, 2018
47
March, 2020
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
22
October, 2017
11
September, 2017
8
December, 2019
8
January, 2018
6
November, 2020
4
August, 2018
2
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
113
tsv
49
bam
31
bigWig
26
bed narrowPeak
24
tagAlign
3
bed bed3+
Organism
148
Homo sapiens
Biosample type
99
tissue
38
in vitro differentiated cells
8
cell line
4
primary cell
Organ
92
heart
8
embryo
6
blood vessel
6
vasculature
4
epithelium
4
liver
2
artery
1
adipose tissue
1
connective tissue
Project
149
AMP
Genome assembly (visualization)
41
GRCh38
40
hg19
Lab
149
AMP-T2D consortium
128
Katalin Susztak, Upenn
35
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
149 results
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Clear Filters
single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
RNA microarray
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
aorta
4
+ See 9 more…
in vitro differentiated cells
neural progenitor cell
21
7
10
cell line
H1-hESC
8
primary cell
hepatocyte
4
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