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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
total RNA-seq
40
ChIP-seq
18
snATAC-seq
16
ATAC-seq
16
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
111
Transcription
40
DNA binding
34
DNA accessibility
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
8
control
5
RNA binding protein
Date released
120
May, 2021
41
May, 2020
23
February, 2023
16
January, 2021
6
May, 2022
Available data
216
bigWig
200
bam
bed narrowPeak
92
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
206
Homo sapiens
Biosample type
120
primary cell
47
in vitro differentiated cells
34
tissue
5
cell line
Organ
33
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
147
T1D
59
AMP
Genome assembly (visualization)
102
hg19
92
GRCh38
Lab
2091
AMP-T2D consortium
324
Klaus Kaestner, Upenn
206
Kyle Gaulton, UCSD
78
Katalin Susztak, Upenn
47
KPMP
23
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
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bed narrowPeak
BIOSAMPLE
ASSAY
206 results
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Clear Filters
total RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
CD8-positive, alpha-beta T cell
4
3
1
peripheral blood mononuclear cell
8
B cell
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 29 more…
in vitro differentiated cells
embryonic stem cell
5
37
5
tissue
islet of Langerhans
11
6
11
pancreas
1
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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