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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
406
ChIP-seq
Assay category
406
DNA binding
Target of assay
244
transcription factor
88
histone
88
histone modification
71
control
66
recombinant protein
50
broad histone mark
38
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
585
February, 2021
406
November, 2017
378
August, 2017
333
May, 2020
311
August, 2021
307
May, 2021
283
October, 2019
199
May, 2022
192
February, 2023
162
July, 2018
117
May, 2019
102
July, 2019
80
April, 2019
79
November, 2018
76
October, 2018
75
December, 2017
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
April, 2020
16
January, 2021
15
May, 2023
9
June, 2019
9
November, 2020
9
September, 2017
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
392
bam
334
bigWig
324
fastq
313
bed narrowPeak
312
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
406
Homo sapiens
Biosample type
315
cell line
82
tissue
9
primary cell
Organ
315
liver
91
brain
6
epithelium
6
vasculature
3
blood vessel
Project
406
AMP
Genome assembly (visualization)
281
hg19
280
GRCh38
Lab
406
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
month_released!
April, 2020
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
406 results
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Clear Filters
ChIP-seq
cell line
HepG2
315
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 1 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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