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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
total RNA-seq
18
small RNA-seq
13
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
4
single cell RNA-seq
2
FAIRE-seq
2
RNA microarray
Assay category
71
Transcription
25
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
3
control
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
90
bigWig
87
bam
72
tsv
21
bed bedMethyl
21
bigBed bedMethyl
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
114
Homo sapiens
Biosample type
80
tissue
34
primary cell
Organ
24
heart
18
brain
18
epithelium
17
connective tissue
15
liver
13
kidney
12
adipose tissue
12
vasculature
11
blood vessel
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
114
AMP
Genome assembly (visualization)
94
hg19
84
GRCh38
Lab
114
AMP-T2D consortium
Audit category:
4
audit script error
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
month_released!
April, 2020
BIOSAMPLE
ASSAY
114 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
RNA microarray
tissue
heart left ventricle
2
1
4
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 28 more…
primary cell
hepatocyte
5
1
cerebellar granule cell
2
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 19 more…
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