Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
Assay category
39
DNA binding
Target of assay
20
histone
20
histone modification
19
transcription factor
12
broad histone mark
11
chromatin remodeller
8
narrow histone mark
6
RNA binding protein
1
recombinant protein
Date released
21
November, 2017
August, 2017
10
December, 2017
5
November, 2018
2
February, 2018
1
October, 2018
Available data
39
bam
39
bigWig
39
fastq
37
bed narrowPeak
25
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
6
bed bed3+
Organism
39
Homo sapiens
Biosample type
26
cell line
10
in vitro differentiated cells
2
stem cell
1
tissue
Organ
26
liver
2
embryo
1
pancreas
Project
39
AMP
Genome assembly (visualization)
39
hg19
35
GRCh38
Lab
39
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
39
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2017
assay_title!
shRNA RNA-seq
BIOSAMPLE
ASSAY
39 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2
26
in vitro differentiated cells
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
stem cell
hESC
2
tissue
body of pancreas
1
Download