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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
310
ChIP-seq
Assay category
310
DNA binding
Target of assay
247
histone
247
histone modification
145
narrow histone mark
102
broad histone mark
57
control
6
transcription factor
Date released
87
May, 2021
August, 2017
78
November, 2017
50
May, 2020
49
October, 2019
24
August, 2021
14
October, 2017
8
February, 2021
Available data
2898
bam
2705
bigWig
1612
bed narrowPeak
1361
tsv
1060
fastq
976
bigBed narrowPeak
310
tagAlign
277
bed broadPeak
266
bigBed broadPeak
234
bed bed3+
153
zippedFastqFolder
76
txt
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
18
hic
16
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
Organism
310
Homo sapiens
Biosample type
179
tissue
88
primary cell
23
in vitro differentiated cells
20
cell line
Organ
118
brain
66
liver
7
epithelium
6
artery
6
blood vessel
6
heart
6
vasculature
3
pancreas
1
pituitary gland
Project
226
AMP
84
T1D
Genome assembly (visualization)
226
GRCh38
197
hg19
Lab
226
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2017
assay_title!
whole genome sequencing assay
BIOSAMPLE
ASSAY
310 results
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Clear Filters
ChIP-seq
tissue
liver
50
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
brain
14
+ See 39 more…
primary cell
monocyte
84
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
pancreatic PP cell
3
cell line
HepG2
12
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
See all biosamples
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