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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
DNase-seq
75
ChIP-seq
2
ATAC-seq
Assay category
202
DNA accessibility
75
DNA binding
Target of assay
47
transcription factor
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
183
June, 2019
70
November, 2017
August, 2017
9
November, 2018
9
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2898
bam
2705
bigWig
1612
bed narrowPeak
1361
tsv
1060
fastq
976
bigBed narrowPeak
310
tagAlign
277
bed broadPeak
266
bigBed broadPeak
234
bed bed3+
153
zippedFastqFolder
76
txt
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
18
hic
16
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
277
Homo sapiens
Biosample type
186
tissue
59
cell line
32
primary cell
Organ
77
kidney
63
liver
47
brain
35
limb
32
musculature of body
29
heart
21
epithelium
18
ureter
16
vasculature
13
blood vessel
9
pancreas
7
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
277
AMP
Genome assembly (visualization)
259
GRCh38
253
hg19
Lab
275
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2017
BIOSAMPLE
ASSAY
277 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
12
+ See 43 more…
cell line
HepG2
58
Panc1
1
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
cardiac fibroblast
2
+ See 15 more…
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