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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
427
ChIP-seq
5
total RNA-seq
3
DNase-seq
1
Hi-C
1
WGBS
Assay category
427
DNA binding
5
Transcription
3
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
323
transcription factor
82
recombinant protein
69
control
57
RNA binding protein
32
histone
32
histone modification
23
chromatin remodeller
18
broad histone mark
14
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
53
November, 2018
August, 2017
5
January, 2019
1
December, 2018
Available data
654
bam
604
bigWig
437
fastq
422
bed narrowPeak
352
bigBed narrowPeak
174
tsv
66
tagAlign
63
bed broadPeak
63
bigBed broadPeak
10
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
437
Homo sapiens
Biosample type
367
cell line
55
tissue
15
in vitro differentiated cells
Organ
437
liver
298
pancreas
223
epithelium
60
blood
60
bodily fluid
29
connective tissue
26
adipose tissue
24
spleen
23
embryo
21
brain
6
vasculature
3
blood vessel
Project
437
AMP
Genome assembly (visualization)
370
hg19
324
GRCh38
Lab
437
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2017
BIOSAMPLE
ASSAY
437 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
360
5
1
1
tissue
liver
42
2
right lobe of liver
10
1
in vitro differentiated cells
hepatocyte
15
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