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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
DNase-seq
72
ChIP-seq
1
ATAC-seq
Assay category
201
DNA accessibility
72
DNA binding
Target of assay
47
transcription factor
25
histone
25
histone modification
13
narrow histone mark
12
broad histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
183
June, 2019
70
November, 2017
August, 2017
9
November, 2018
9
October, 2019
October, 2017
1
March, 2019
1
November, 2020
Available data
2883
bam
2691
bigWig
1600
bed narrowPeak
1361
tsv
1043
fastq
970
bigBed narrowPeak
296
tagAlign
273
bed broadPeak
266
bigBed broadPeak
234
bed bed3+
153
zippedFastqFolder
76
txt
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
18
hic
16
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
273
Homo sapiens
Biosample type
182
tissue
59
cell line
32
primary cell
Organ
77
kidney
63
liver
44
brain
35
limb
32
musculature of body
29
heart
21
epithelium
18
ureter
16
vasculature
13
blood vessel
8
pancreas
7
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
273
AMP
Genome assembly (visualization)
255
GRCh38
249
hg19
Lab
272
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
inconsistent ontology term
Audit category:
13
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2017
October, 2017
BIOSAMPLE
ASSAY
273 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
12
+ See 43 more…
cell line
HepG2
58
Panc1
1
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
cardiac fibroblast
2
+ See 15 more…
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