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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
2
MeRIP-seq
Assay category
33
DNA binding
Target of assay
785
histone
785
histone modification
453
transcription factor
407
narrow histone mark
378
broad histone mark
278
control
102
RNA binding protein
82
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
2
nucleotide modification
Date released
15
November, 2017
7
November, 2018
6
January, 2019
August, 2017
3
December, 2017
2
December, 2018
2
November, 2020
Available data
33
bam
33
bed narrowPeak
33
bigBed narrowPeak
33
bigWig
33
fastq
4
bed broadPeak
4
bigBed broadPeak
Organism
35
Homo sapiens
Biosample type
30
cell line
4
tissue
1
in vitro differentiated cells
Organ
23
liver
10
blood
10
bodily fluid
2
pancreas
1
epithelium
Project
35
AMP
Genome assembly (visualization)
33
hg19
31
GRCh38
Lab
33
AMP-T2D consortium
2
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
3
inconsistent control
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
11
inconsistent control read length
8
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2017
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
MeRIP-seq
cell line
HepG2
20
GM12878
10
tissue
islet of Langerhans
2
liver
2
in vitro differentiated cells
hepatocyte
1
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