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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
441
ChIP-seq
72
total RNA-seq
10
ATAC-seq
4
STARR-seq
4
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
441
DNA binding
Target of assay
339
transcription factor
82
recombinant protein
72
control
58
RNA binding protein
25
histone
25
histone modification
24
chromatin remodeller
13
broad histone mark
12
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
60
November, 2018
27
December, 2018
18
August, 2021
January, 2019
13
October, 2019
8
February, 2021
Available data
422
bam
402
fastq
376
bigWig
357
bed narrowPeak
338
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
Organism
441
Homo sapiens
Biosample type
898
tissue
441
cell line
254
primary cell
191
in vitro differentiated cells
3
stem cell
Organ
378
liver
42
blood
42
bodily fluid
13
pancreas
6
artery
6
blood vessel
6
heart
6
vasculature
Project
441
AMP
Genome assembly (visualization)
372
hg19
311
GRCh38
Lab
423
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
month_released!
January, 2019
BIOSAMPLE
ASSAY
441 results
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ChIP-seq
cell line
HepG2
378
GM12878
42
Panc1
13
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
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