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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
17
DNA binding
3
DNA accessibility
2
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
21
October, 2019
1
March, 2020
1
May, 2021
Available data
20
bam
15
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
23
Homo sapiens
Biosample type
23
primary cell
Organ
865
pancreas
785
liver
665
connective tissue
490
adipose tissue
433
epithelium
387
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
61
eye
51
blood
51
bodily fluid
43
nerve
31
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
22
AMP
1
T1D
Genome assembly (visualization)
17
hg19
12
GRCh38
Lab
22
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
audit script error
audit.ERROR.category!
inconsistent ontology term
month_released!
January, 2019
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
pCHi-C
primary cell
endothelial cell of umbilical vein
17
2
2
1
megakaryocyte
1
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