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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
Hi-C
Assay category
1713
DNA binding
1693
Transcription
711
DNA accessibility
93
DNA methylation
23
3D chromatin structure
1
DNA sequencing
Date released
6
July, 2019
6
March, 2020
3
August, 2021
3
October, 2022
2
October, 2019
1
December, 2018
1
March, 2019
1
March, 2023
November, 2019
Available data
14
hic
12
bedpe bed3+
3
bed bed3+
3
bigWig
3
cool
3
hdf5
1
bedpe
1
fastq
Organism
23
Homo sapiens
Biosample type
14
tissue
6
primary cell
3
cell line
Organ
7
epithelium
7
pancreas
6
musculature of body
blood vessel
5
vasculature
4
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
Project
19
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
16
hg19
2
GRCh38
Lab
15
AMP-T2D consortium
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Audit category:
inconsistent ontology term
3
audit script error
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
month_released!
November, 2019
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
23 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
2
psoas muscle
2
heart
1
heart left ventricle
1
+ See 4 more…
primary cell
astrocyte of the cerebellum
1
brain pericyte
1
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
+ See 1 more…
cell line
HepG2
2
Panc1
1
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