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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
501
total RNA-seq
37
snATAC-seq
27
single cell RNA-seq
22
ATAC-seq
8
ChIP-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
528
Transcription
59
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
528
bam
515
tsv
507
bigWig
45
fastq
23
bed narrowPeak
8
tagAlign
6
csv
5
txt
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
605
Homo sapiens
Biosample type
480
tissue
70
cell line
48
primary cell
8
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
66
artery
66
blood vessel
66
bone element
66
heart
66
vasculature
19
lung
8
kidney
8
skeleton
6
epithelium
6
limb
6
pancreas
3
liver
Project
542
AMP
45
HPAP
19
LungMap
Genome assembly (visualization)
530
hg19
524
GRCh38
Lab
542
AMP-T2D consortium
45
Klaus Kaestner, Upenn
19
Xin Sun, UCSD
Audit category:
inconsistent ontology term
32
audit script error
1
inconsistent replicate
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
606 results
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Clear Filters
total RNA-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone tissue
58
lung
10
9
kidney
5
visceral abdominal adipose tissue
3
+ See 13 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
in vitro differentiated cells
adipocyte
4
4
See all biosamples
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