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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
4
MeRIP-seq
4
total RNA-seq
1
ATAC-seq
1
DNase-seq
1
Hi-C
Assay category
34
DNA binding
4
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
28
transcription factor
6
control
2
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
40
bam
35
bigWig
35
fastq
32
bed narrowPeak
31
bigBed narrowPeak
4
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
45
Homo sapiens
Biosample type
28
cell line
11
tissue
6
primary cell
Organ
27
blood
27
bodily fluid
7
spleen
6
connective tissue
4
pancreas
1
liver
Project
45
AMP
Genome assembly (visualization)
36
GRCh38
36
hg19
Lab
41
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
inconsistent ontology term
1
inconsistent control
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
45 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
GM12878
27
HepG2
1
tissue
spleen
7
islet of Langerhans
4
primary cell
osteoblast
4
1
1
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