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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
50
total RNA-seq
41
WGBS
34
single cell RNA-seq
22
snATAC-seq
Assay category
99
DNA accessibility
84
Transcription
41
DNA methylation
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
38
bed narrowPeak
24
bam
24
fastq
24
tsv
20
bigWig
7
txt
1
bed bed3+
Organism
224
Homo sapiens
Biosample type
134
primary cell
90
tissue
Organ
105
pancreas
80
epithelium
41
liver
11
brain
4
musculature of body
3
blood vessel
3
heart
3
limb
3
vasculature
2
adipose tissue
2
artery
2
connective tissue
1
eye
1
nerve
1
spinal cord
Project
134
HPAP
90
AMP
Genome assembly (visualization)
39
hg19
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
26
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
224 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
18
6
skeletal muscle tissue
1
1
Ammon's horn
1
C1 segment of cervical spinal cord
1
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