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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
snATAC-seq
18
single cell RNA-seq
6
WGBS
4
ATAC-seq
3
snDrop-seq
1
pCHi-C
Assay category
31
DNA accessibility
18
Transcription
6
DNA methylation
Date released
267
August, 2021
194
February, 2023
176
May, 2022
129
August, 2017
105
May, 2021
62
October, 2019
59
February, 2021
59
September, 2020
58
May, 2020
47
September, 2023
36
March, 2020
24
February, 2020
24
July, 2019
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
8
January, 2018
8
October, 2017
7
August, 2020
5
March, 2023
4
July, 2018
4
March, 2019
4
November, 2020
4
October, 2022
3
December, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
November, 2019
1
September, 2018
Available data
bam
515
tsv
507
bigWig
45
fastq
23
bed narrowPeak
8
tagAlign
6
csv
5
txt
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
59
Homo sapiens
Biosample type
45
primary cell
9
tissue
4
in vitro differentiated cells
1
cell line
Organ
8
kidney
6
epithelium
6
pancreas
4
connective tissue
2
liver
Project
45
HPAP
14
AMP
Genome assembly (visualization)
5
hg19
Lab
45
Klaus Kaestner, Upenn
14
AMP-T2D consortium
Audit category:
inconsistent ontology term
32
audit script error
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
59 results
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Clear Filters
snATAC-seq
single cell RNA-seq
WGBS
ATAC-seq
snDrop-seq
pCHi-C
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
tissue
kidney
5
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
liver
1
in vitro differentiated cells
adipocyte
4
cell line
HepG2
1
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