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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
DNase-seq
19
ATAC-seq
19
total RNA-seq
9
ChIP-seq
1
Hi-C
Assay category
202
DNA accessibility
19
Transcription
9
DNA binding
1
3D chromatin structure
Target of assay
4
control
3
histone
3
histone modification
3
narrow histone mark
2
RNA binding protein
2
transcription factor
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
230
bam
207
bed narrowPeak
207
bigWig
188
bigBed narrowPeak
183
bed bed3+
183
bed broadPeak
183
bigBed broadPeak
19
tsv
1
bedpe bed3+
1
hic
Organism
231
Homo sapiens
Biosample type
201
tissue
30
primary cell
Organ
77
kidney
43
pancreas
34
musculature of body
31
limb
30
brain
30
heart
18
ureter
16
epithelium
7
eye
6
connective tissue
6
vasculature
5
blood vessel
2
artery
2
liver
1
adipose tissue
Project
231
AMP
Genome assembly (visualization)
226
GRCh38
204
hg19
Lab
231
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
231 results
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Clear Filters
DNase-seq
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
tissue
islet of Langerhans
19
19
1
heart
18
muscle of arm
17
kidney
13
brain
12
+ See 35 more…
primary cell
cardiac muscle cell
1
3
retinal pigment epithelial cell
1
3
cardiac fibroblast
2
1
skeletal muscle cell
1
2
glomerular visceral epithelial cell
2
+ See 13 more…
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