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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
total RNA-seq
103
ATAC-seq
65
ChIP-seq
1
pCHi-C
Assay category
186
Transcription
103
DNA accessibility
65
DNA binding
Target of assay
39
histone
39
histone modification
29
narrow histone mark
26
control
10
broad histone mark
Date released
406
November, 2017
333
May, 2020
311
August, 2021
307
May, 2021
287
October, 2019
286
August, 2017
200
May, 2022
186
June, 2019
184
February, 2023
160
July, 2018
132
February, 2021
117
May, 2019
90
December, 2017
89
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
46
March, 2020
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
22
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
November, 2020
4
October, 2022
3
August, 2018
2
June, 2018
1
August, 2022
Available data
289
bam
265
bigWig
185
tsv
64
tagAlign
38
bed narrowPeak
16
fastq
6
bigBed narrowPeak
4
bed broadPeak
Organism
355
Homo sapiens
Biosample type
215
tissue
139
primary cell
1
cell line
Organ
194
liver
16
brain
5
pancreas
1
adipose tissue
connective tissue
1
spleen
Project
314
AMP
41
T1D
Genome assembly (visualization)
264
hg19
216
GRCh38
Lab
313
AMP-T2D consortium
41
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
Audit category:
4
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
355 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
liver
143
50
brain
15
body of pancreas
4
cerebellum (Hemisphere)
1
islet of Langerhans
1
+ See 1 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 22 more…
cell line
HepG2
1
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