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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
421
ChIP-seq
7
ATAC-seq
Assay category
421
DNA binding
7
DNA accessibility
Target of assay
244
transcription factor
100
histone
100
histone modification
74
control
66
recombinant protein
60
broad histone mark
40
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
406
November, 2017
333
May, 2020
311
August, 2021
307
May, 2021
287
October, 2019
286
August, 2017
200
May, 2022
186
June, 2019
184
February, 2023
160
July, 2018
132
February, 2021
117
May, 2019
90
December, 2017
89
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
46
March, 2020
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
22
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
November, 2020
4
October, 2022
3
August, 2018
2
June, 2018
1
August, 2022
Available data
406
bam
347
bigWig
340
fastq
324
bed narrowPeak
318
bigBed narrowPeak
92
tagAlign
74
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
428
Homo sapiens
Biosample type
315
cell line
104
tissue
9
primary cell
Organ
315
liver
107
brain
6
epithelium
6
vasculature
5
pancreas
3
blood vessel
1
adipose tissue
connective tissue
1
spleen
Project
428
AMP
Genome assembly (visualization)
293
GRCh38
293
hg19
Lab
427
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
14
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
428 results
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Clear Filters
ChIP-seq
ATAC-seq
cell line
HepG2
315
tissue
layer of hippocampus
22
brain
15
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 5 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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