Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
ChIP-seq
22
total RNA-seq
18
ATAC-seq
4
DNase-seq
4
pCHi-C
1
Hi-C
Assay category
193
DNA binding
22
DNA accessibility
22
Transcription
1
3D chromatin structure
Target of assay
166
histone
166
histone modification
127
narrow histone mark
39
broad histone mark
27
control
Date released
469
February, 2021
352
August, 2017
271
August, 2021
242
October, 2019
193
May, 2020
162
June, 2019
120
July, 2018
115
May, 2019
106
February, 2023
104
May, 2021
90
December, 2017
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
47
September, 2023
42
March, 2020
40
May, 2024
39
February, 2018
39
November, 2019
26
November, 2018
24
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
March, 2023
1
August, 2018
1
August, 2022
Available data
184
bam
160
bigWig
149
bed narrowPeak
49
bigBed narrowPeak
49
tagAlign
8
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bedpe bed3+
1
hic
1
tagAlign bed3+
Organism
242
Homo sapiens
Biosample type
240
tissue
primary cell
cell line
2
in vitro differentiated cells
Organ
84
brain
69
limb
42
nerve
26
artery
26
blood vessel
26
vasculature
21
eye
8
heart
6
liver
4
connective tissue
4
gonad
4
kidney
4
ovary
3
pancreas
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
242
AMP
Genome assembly (visualization)
163
hg19
159
GRCh38
Lab
242
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
biosample_type!
cell line
primary cell
BIOSAMPLE
ASSAY
242 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
Hi-C
tissue
islet of Langerhans
21
14
13
4
tibial nerve
35
4
1
2
tibial artery
23
1
2
heart
5
2
1
brain
5
1
+ See 76 more…
in vitro differentiated cells
adipocyte
2
See all biosamples
Download