Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
ChIP-seq
25
total RNA-seq
15
ATAC-seq
4
pCHi-C
3
Hi-C
2
DNase-seq
Assay category
172
DNA binding
25
Transcription
17
DNA accessibility
3
3D chromatin structure
Target of assay
136
histone
136
histone modification
119
narrow histone mark
36
control
17
broad histone mark
Date released
587
February, 2021
369
August, 2017
333
May, 2020
316
August, 2021
309
May, 2021
221
October, 2019
200
May, 2022
194
February, 2023
162
July, 2018
104
July, 2019
94
November, 2017
59
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
December, 2017
39
February, 2018
39
November, 2019
31
October, 2018
24
February, 2020
22
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
16
January, 2021
15
May, 2023
15
November, 2018
9
January, 2019
9
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
June, 2019
4
October, 2022
2
June, 2018
1
August, 2022
Available data
229
bam
193
bigWig
176
bed narrowPeak
bigBed narrowPeak
49
tagAlign
11
tsv
9
bed broadPeak
9
bigBed broadPeak
8
bed bed3+
2
hic
1
bedpe bed3+
1
hdf5
1
tagAlign bed3+
1
tar
Organism
221
Homo sapiens
Biosample type
193
tissue
19
primary cell
9
cell line
Organ
84
brain
23
limb
21
eye
20
epithelium
16
kidney
16
nerve
14
blood vessel
14
vasculature
11
pancreas
8
heart
8
vein
6
artery
6
liver
4
gonad
4
ovary
2
pituitary gland
1
connective tissue
1
lymph node
1
skin of body
Project
221
AMP
Genome assembly (visualization)
127
hg19
123
GRCh38
Lab
221
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
221 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
DNase-seq
tissue
islet of Langerhans
21
14
13
4
tibial nerve
11
4
1
heart
5
2
1
brain
5
1
liver
5
1
+ See 75 more…
primary cell
endothelial cell of umbilical vein
7
1
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
cell line
Panc1
7
1
glomerular visceral epithelial cell
1
See all biosamples
Download