Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
25
total RNA-seq
17
ATAC-seq
6
DNase-seq
4
pCHi-C
2
Hi-C
Assay category
190
DNA binding
25
Transcription
23
DNA accessibility
2
3D chromatin structure
Target of assay
161
histone
161
histone modification
129
narrow histone mark
32
broad histone mark
29
control
Date released
521
February, 2021
411
August, 2017
400
November, 2017
333
May, 2020
310
August, 2021
309
May, 2021
244
October, 2019
200
May, 2022
186
June, 2019
162
July, 2018
159
February, 2023
94
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
67
May, 2019
59
September, 2020
49
April, 2018
47
September, 2023
43
March, 2020
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
23
October, 2017
21
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
183
bam
157
bigWig
142
bed narrowPeak
49
tagAlign
37
bigBed narrowPeak
11
tsv
4
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bedpe bed3+
1
hdf5
1
hic
1
tagAlign bed3+
Organism
244
Homo sapiens
Biosample type
214
tissue
17
cell line
11
primary cell
2
in vitro differentiated cells
Organ
84
brain
69
limb
47
blood vessel
vasculature
42
nerve
34
epithelium
26
artery
21
eye
21
vein
18
pancreas
17
kidney
8
heart
6
liver
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
244
AMP
Genome assembly (visualization)
160
hg19
156
GRCh38
Lab
244
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
organ_slims!
vasculature
BIOSAMPLE
ASSAY
244 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
Hi-C
tissue
islet of Langerhans
21
14
13
4
tibial nerve
35
4
1
2
heart
5
2
1
brain
5
1
liver
5
1
+ See 75 more…
cell line
Panc1
13
1
1
glomerular visceral epithelial cell
1
1
primary cell
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
in vitro differentiated cells
adipocyte
2
See all biosamples
Download