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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
5
DNase-seq
3
total RNA-seq
1
FAIRE-seq
1
Hi-C
Assay category
24
DNA binding
6
DNA accessibility
3
Transcription
1
3D chromatin structure
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
3
control
Date released
80
May, 2022
61
September, 2018
52
February, 2023
34
October, 2019
33
April, 2018
32
July, 2018
29
August, 2017
19
September, 2020
16
June, 2019
15
December, 2017
12
July, 2019
7
August, 2020
6
December, 2019
6
February, 2021
6
November, 2017
5
September, 2017
4
August, 2021
4
May, 2021
3
August, 2018
3
October, 2022
2
May, 2019
2
October, 2018
1
June, 2018
1
March, 2020
Available data
31
bam
25
bigWig
20
bed narrowPeak
14
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
3
tsv
2
bed bed3+
1
hic
1
tar
Organism
34
Homo sapiens
Biosample type
32
primary cell
2
cell line
Organ
84
brain
69
limb
47
blood vessel
47
vasculature
42
nerve
34
epithelium
26
artery
21
eye
21
vein
18
pancreas
17
kidney
8
heart
6
liver
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
34
AMP
Genome assembly (visualization)
26
hg19
22
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
1
audit script error
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
34 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
cell line
glomerular visceral epithelial cell
1
1
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